Package it.uniroma2.art.semanticturkey.ontology.impl

Class OntologyManagerImpl

java.lang.Object

it.uniroma2.art.semanticturkey.ontology.impl.OntologyManagerImpl

All Implemented Interfaces:

OntologyManager

public class OntologyManagerImpl
extends Object
implements OntologyManager

Native implementation of OntologyManager for RDF4J.

Author:

Armando Stellato, Manuel Fiorelli

Constructor Summary

Constructors

Constructor	Description
OntologyManagerImpl(Project project, String repositoryName, boolean validationEnabled)

Method Summary

Modifier and Type	Method	Description
void	addOntologyImportFromLocalFile(String baseURI, String fromLocalFilePath, String toLocalFile, ImportModality modality, boolean updateImportStatement, org.eclipse.rdf4j.repository.RepositoryConnection conn, boolean validationCurrentlyEnabled, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports, Set<org.eclipse.rdf4j.model.IRI> importedOntologies)
void	addOntologyImportFromLocalFile(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI, ImportModality modality, String fromLocalFilePath, String toLocalFile, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Imports an ontology from a local file, and optionally copies it to the ontology mirror.
void	addOntologyImportFromLocalProject(Project sourceProject, ImportModality modality, boolean updateImportStatement, org.eclipse.rdf4j.repository.RepositoryConnection conn, boolean validationCurrentlyEnabled, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports, Set<org.eclipse.rdf4j.model.IRI> importedOntologies)
void	addOntologyImportFromLocalProject(org.eclipse.rdf4j.repository.RepositoryConnection conn, ImportModality modality, Project sourceProject, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Imports an ontology from a local project
void	addOntologyImportFromMirror(String baseURI, String mirFileString, ImportModality modality, boolean updateImportStatement, org.eclipse.rdf4j.repository.RepositoryConnection conn, boolean validationCurrentlyEnabled, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports, Set<org.eclipse.rdf4j.model.IRI> importedOntologies)
void	addOntologyImportFromMirror(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI, ImportModality modality, String mirFileString, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Imports an ontology from the ontology mirror
void	addOntologyImportFromWeb(String baseURI, String sourceURL, org.eclipse.rdf4j.rio.RDFFormat rdfFormat, ImportModality modality, boolean updateImportStatement, org.eclipse.rdf4j.repository.RepositoryConnection conn, boolean validationCurrentlyEnabled, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports, Set<org.eclipse.rdf4j.model.IRI> importedOntologies)
void	addOntologyImportFromWeb(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI, ImportModality modality, String sourceURL, org.eclipse.rdf4j.rio.RDFFormat rdfFormat, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Imports an ontology from the web
void	addOntologyImportFromWebToMirror(String baseURI, String sourceURL, String toLocalFile, org.eclipse.rdf4j.rio.RDFFormat rdfFormat, ImportModality modality, boolean updateImportStatement, org.eclipse.rdf4j.repository.RepositoryConnection conn, boolean validationCurrentlyEnabled, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports, Set<org.eclipse.rdf4j.model.IRI> importedOntologies)
void	addOntologyImportFromWebToMirror(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI, ImportModality modality, String sourceURL, String toLocalFile, org.eclipse.rdf4j.rio.RDFFormat rdfFormat, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Imports an ontology from the web and copies it to the ontology mirror
protected boolean	availableNG(org.eclipse.rdf4j.repository.RepositoryConnection conn, org.eclipse.rdf4j.model.IRI ont)	tells if named graph ont is present in the current ontology
void	clearData()	Clear the managed ontology
protected IterationSpy<org.eclipse.rdf4j.model.Statement>	createImportsSpyingIteration(String baseURI, InputStream in, org.eclipse.rdf4j.rio.RDFParser parser, org.eclipse.rdf4j.model.Model capturedImports)
protected IterationSpy<org.eclipse.rdf4j.model.Statement>	createImportsSpyingIteration(String baseURI, org.eclipse.rdf4j.common.iteration.CloseableIteration<org.eclipse.rdf4j.model.Statement> iter, org.eclipse.rdf4j.model.Model capturedImports)
protected IterationSpy<org.eclipse.rdf4j.model.Statement>	createURLImportsSpyingIteration(String baseURI, String sourceURL, org.eclipse.rdf4j.rio.RDFFormat rdfFormat, org.eclipse.rdf4j.model.Model capturedImports)
void	declareApplicationOntology(org.eclipse.rdf4j.model.IRI ont, boolean declareImport, boolean ng, boolean ns)	It can be used by ST extensions to declare use of application ontologies for supporting their functionalities.
void	declareSupportOntology(org.eclipse.rdf4j.model.IRI ont, boolean declareImport, boolean ng, boolean ns)	It can be used to declare use of an ontology, the presence of which is required by the system to work properly.
void	disconnectImportedOntologyFromProject(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI)	Disconnects an imported ontology from the source project
protected void	doImport(org.eclipse.rdf4j.repository.RepositoryConnection conn, boolean validationCurrentlyEnabled, ImportModality mod, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports, Set<org.eclipse.rdf4j.model.IRI> importedOntologies, String baseURI, ImportMethod method)
void	downloadImportedOntologyFromWeb(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI, String altURL, org.eclipse.rdf4j.rio.RDFFormat rdfFormat, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Downloads an ontology that is a failed import from the web
void	downloadImportedOntologyFromWebToMirror(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI, String altURL, String toLocalFile, org.eclipse.rdf4j.rio.RDFFormat rdfFormat, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Downloads an ontology that is a failed import from the web to the ontology mirror
String	getBaseURI()	Returns the base URI of the managed ontology
Collection<org.eclipse.rdf4j.model.IRI>	getDeclaredImports(org.eclipse.rdf4j.repository.RepositoryConnection conn, ImportModality mod, boolean excludeStagedRemovals)	retrieves the list of imports for the given ImportModality note that these are imports declared (it is not assured that they have been imported successfully)
void	getImportedOntologyFromLocalFile(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI, String fromLocalFilePath, String toLocalFile, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Retrieves an ontology that is a failed import from a local file and copies it to the ontology mirror
void	getImportedOntologyFromLocalProject(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI, Project sourceProject, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Retrieves an ontology that is a failed import from a local project
void	getImportedOntologyFromMirror(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Retrieves an ontology that is a failed import from the ontology mirror
ImportStatus	getImportStatus(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI, boolean canonicalComparison)	Returns the status of an ontology import.
NSPrefixMappings	getMappingsPersistence()	retrieves mapping persistence
protected MirroredOntologyFile	getMirFile(String toLocalFile, org.eclipse.rdf4j.rio.RDFFormat rdfFormat)
Map<String,String>	getNSPrefixMappings(boolean explicit)	Returns the prefixed defined in the managed ontology.
LoadDataRDFHandler	getRDFHandlerForLoadData(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI, org.eclipse.rdf4j.model.Resource graph, boolean flattenGraphs, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Returns an RDFHandler that adds the data to the ontology being edited (i.e.
org.eclipse.rdf4j.repository.Repository	getRepository()	Returns the underlying Repository
Collection<OntologyImport>	getUserOntologyImportTree(org.eclipse.rdf4j.repository.RepositoryConnection conn)	Returns a hierarchical representation of user ontology Imports.
void	initializeMappingsPersistence(NSPrefixMappings nsPrefixMappings)	Initializes mapping persistence
boolean	isApplicationOntNamespace(String ns)	Checks whether ns is an application ontology
boolean	isSupportOntNamespace(String ns)	Checks whether ns is a support ontology
void	loadOntologyData(org.eclipse.rdf4j.repository.RepositoryConnection conn, File inputFile, String baseURI, org.eclipse.rdf4j.rio.RDFFormat format, org.eclipse.rdf4j.model.Resource graph, boolean flattenGraphs, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Adds RDF data directly to the ontology being edited (i.e.
void	mirrorOntology(String baseURI, String toLocalFile)	Copies an ontology to the ontology mirror.
void	removeNSPrefixMapping(String namespace, boolean checkOnlyExplicit)	Removes all prefix declarations for the supplied namespace
void	removeOntologyImport(org.eclipse.rdf4j.repository.RepositoryConnection conn, String uriToBeRemoved)	Removes an ontology import
void	removeOntologyImport(org.eclipse.rdf4j.repository.RepositoryConnection conn, String uriToBeRemoved, ImportModality mod)
void	setBaseURI(String baseURI)	Sets the base URI of the managed ontology
void	setNSPrefixMapping(String prefix, String namespace)	Defines a namespace prefix.
void	startOntModel(String baseURI, File repoDir, org.eclipse.rdf4j.repository.config.RepositoryConfig supportRepoConfig)	Starts the ontology manager
void	updateImportedOntologyFromLocalFile(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI, String fromLocalFilePath, String toLocalFile, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Updates an ontology import from a local file and copies it to the ontology mirror
void	updateImportedOntologyFromLocalProject(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI, String projectName, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Updates an ontology import from a local project
void	updateImportedOntologyFromMirror(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Updates an ontology import from the ontology mirror
void	updateImportedOntologyFromWeb(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI, String altURL, org.eclipse.rdf4j.rio.RDFFormat rdfFormat, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Updates an ontology import from the web
void	updateImportedOntologyFromWebToMirror(org.eclipse.rdf4j.repository.RepositoryConnection conn, String baseURI, String altURL, String toLocalFile, org.eclipse.rdf4j.rio.RDFFormat rdfFormat, TransitiveImportMethodAllowance transitiveImportAllowance, Set<org.eclipse.rdf4j.model.IRI> failedImports)	Updates an ontology import from the web and stores it to the ontology mirror

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

OntologyManagerImpl

public OntologyManagerImpl(Project project,
 String repositoryName,
 boolean validationEnabled)

Method Details

getBaseURI

public String getBaseURI()

Description copied from interface: OntologyManager

Returns the base URI of the managed ontology

Specified by:

getBaseURI in interface OntologyManager

Returns:

getNSPrefixMappings

public Map<String,String> getNSPrefixMappings(boolean explicit)
                                       throws OntologyManagerException

Description copied from interface: OntologyManager

Returns the prefixed defined in the managed ontology. The returned Map is indexed by the prefixes. If the parameter explicit is set to true, then the returned Map contains only prefixed explicitly set through the OntologyManager.

Specified by:

getNSPrefixMappings in interface OntologyManager

Returns:

Throws:

OntologyManagerException

addOntologyImportFromLocalFile

public void addOntologyImportFromLocalFile(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI,
 ImportModality modality,
 String fromLocalFilePath,
 String toLocalFile,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)
                                    throws org.eclipse.rdf4j.common.exception.RDF4JException,
OntologyManagerException

Description copied from interface: OntologyManager

Imports an ontology from a local file, and optionally copies it to the ontology mirror.

Specified by:

addOntologyImportFromLocalFile in interface OntologyManager

Throws:

org.eclipse.rdf4j.common.exception.RDF4JException

OntologyManagerException

addOntologyImportFromLocalFile

public void addOntologyImportFromLocalFile(String baseURI,
 String fromLocalFilePath,
 String toLocalFile,
 ImportModality modality,
 boolean updateImportStatement,
 org.eclipse.rdf4j.repository.RepositoryConnection conn,
 boolean validationCurrentlyEnabled,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports,
 Set<org.eclipse.rdf4j.model.IRI> importedOntologies)
                                    throws OntologyManagerException

Throws:

OntologyManagerException

addOntologyImportFromMirror

public void addOntologyImportFromMirror(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI,
 ImportModality modality,
 String mirFileString,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)
                                 throws org.eclipse.rdf4j.common.exception.RDF4JException,
OntologyManagerException

Description copied from interface: OntologyManager

Imports an ontology from the ontology mirror

Specified by:

addOntologyImportFromMirror in interface OntologyManager

Throws:

org.eclipse.rdf4j.common.exception.RDF4JException

OntologyManagerException

addOntologyImportFromMirror

public void addOntologyImportFromMirror(String baseURI,
 String mirFileString,
 ImportModality modality,
 boolean updateImportStatement,
 org.eclipse.rdf4j.repository.RepositoryConnection conn,
 boolean validationCurrentlyEnabled,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports,
 Set<org.eclipse.rdf4j.model.IRI> importedOntologies)
                                 throws OntologyManagerException

Throws:

OntologyManagerException

addOntologyImportFromWeb

public void addOntologyImportFromWeb(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI,
 ImportModality modality,
 String sourceURL,
 org.eclipse.rdf4j.rio.RDFFormat rdfFormat,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)
                              throws MalformedURLException,
org.eclipse.rdf4j.common.exception.RDF4JException,
OntologyManagerException

Description copied from interface: OntologyManager

Imports an ontology from the web

Specified by:

addOntologyImportFromWeb in interface OntologyManager

Throws:

MalformedURLException

org.eclipse.rdf4j.common.exception.RDF4JException

OntologyManagerException

addOntologyImportFromWeb

public void addOntologyImportFromWeb(String baseURI,
 String sourceURL,
 org.eclipse.rdf4j.rio.RDFFormat rdfFormat,
 ImportModality modality,
 boolean updateImportStatement,
 org.eclipse.rdf4j.repository.RepositoryConnection conn,
 boolean validationCurrentlyEnabled,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports,
 Set<org.eclipse.rdf4j.model.IRI> importedOntologies)
                              throws OntologyManagerException

Throws:

OntologyManagerException

addOntologyImportFromWebToMirror

public void addOntologyImportFromWebToMirror(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI,
 ImportModality modality,
 String sourceURL,
 String toLocalFile,
 org.eclipse.rdf4j.rio.RDFFormat rdfFormat,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)
                                      throws MalformedURLException,
org.eclipse.rdf4j.common.exception.RDF4JException,
OntologyManagerException

Description copied from interface: OntologyManager

Imports an ontology from the web and copies it to the ontology mirror

Specified by:

addOntologyImportFromWebToMirror in interface OntologyManager

modality - TODO

Throws:

MalformedURLException

org.eclipse.rdf4j.common.exception.RDF4JException

OntologyManagerException

addOntologyImportFromLocalProject

public void addOntologyImportFromLocalProject(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 ImportModality modality,
 Project sourceProject,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)
                                       throws MalformedURLException,
org.eclipse.rdf4j.common.exception.RDF4JException,
OntologyManagerException

Description copied from interface: OntologyManager

Imports an ontology from a local project

Specified by:

addOntologyImportFromLocalProject in interface OntologyManager

modality - TODO

Throws:

MalformedURLException

org.eclipse.rdf4j.common.exception.RDF4JException

OntologyManagerException

disconnectImportedOntologyFromProject

public void disconnectImportedOntologyFromProject(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI)
                                           throws OntologyManagerException

Description copied from interface: OntologyManager

Disconnects an imported ontology from the source project

Specified by:

disconnectImportedOntologyFromProject in interface OntologyManager

Throws:

OntologyManagerException

addOntologyImportFromLocalProject

public void addOntologyImportFromLocalProject(Project sourceProject,
 ImportModality modality,
 boolean updateImportStatement,
 org.eclipse.rdf4j.repository.RepositoryConnection conn,
 boolean validationCurrentlyEnabled,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports,
 Set<org.eclipse.rdf4j.model.IRI> importedOntologies)
                                       throws OntologyManagerException

Throws:

OntologyManagerException

addOntologyImportFromWebToMirror

public void addOntologyImportFromWebToMirror(String baseURI,
 String sourceURL,
 String toLocalFile,
 org.eclipse.rdf4j.rio.RDFFormat rdfFormat,
 ImportModality modality,
 boolean updateImportStatement,
 org.eclipse.rdf4j.repository.RepositoryConnection conn,
 boolean validationCurrentlyEnabled,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports,
 Set<org.eclipse.rdf4j.model.IRI> importedOntologies)
                                      throws OntologyManagerException

Throws:

OntologyManagerException

getUserOntologyImportTree

public Collection<OntologyImport> getUserOntologyImportTree(org.eclipse.rdf4j.repository.RepositoryConnection conn)

Description copied from interface: OntologyManager

Returns a hierarchical representation of user ontology Imports.

Specified by:

getUserOntologyImportTree in interface OntologyManager

Returns:

getMirFile

protected MirroredOntologyFile getMirFile(String toLocalFile,
 org.eclipse.rdf4j.rio.RDFFormat rdfFormat)

createURLImportsSpyingIteration

protected IterationSpy<org.eclipse.rdf4j.model.Statement> createURLImportsSpyingIteration(String baseURI,
 String sourceURL,
 org.eclipse.rdf4j.rio.RDFFormat rdfFormat,
 org.eclipse.rdf4j.model.Model capturedImports)
                                                                                   throws MalformedURLException,
IOException,
org.eclipse.rdf4j.rio.UnsupportedRDFormatException,
OntologyManagerException

Throws:

MalformedURLException

IOException

org.eclipse.rdf4j.rio.UnsupportedRDFormatException

OntologyManagerException

createImportsSpyingIteration

protected IterationSpy<org.eclipse.rdf4j.model.Statement> createImportsSpyingIteration(String baseURI,
 InputStream in,
 org.eclipse.rdf4j.rio.RDFParser parser,
 org.eclipse.rdf4j.model.Model capturedImports)

createImportsSpyingIteration

protected IterationSpy<org.eclipse.rdf4j.model.Statement> createImportsSpyingIteration(String baseURI,
 org.eclipse.rdf4j.common.iteration.CloseableIteration<org.eclipse.rdf4j.model.Statement> iter,
 org.eclipse.rdf4j.model.Model capturedImports)

doImport

protected void doImport(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 boolean validationCurrentlyEnabled,
 ImportModality mod,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports,
 Set<org.eclipse.rdf4j.model.IRI> importedOntologies,
 String baseURI,
 ImportMethod method)
                 throws OntologyManagerException

Throws:

OntologyManagerException

availableNG

protected boolean availableNG(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 org.eclipse.rdf4j.model.IRI ont)
                       throws org.eclipse.rdf4j.common.exception.RDF4JException

tells if named graph ont is present in the current ontology

Parameters:

ont -

Returns:

Throws:

org.eclipse.rdf4j.common.exception.RDF4JException

removeOntologyImport

public void removeOntologyImport(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String uriToBeRemoved)
                          throws IOException

Description copied from interface: OntologyManager

Removes an ontology import

Specified by:

removeOntologyImport in interface OntologyManager

Throws:

IOException

removeOntologyImport

public void removeOntologyImport(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String uriToBeRemoved,
 ImportModality mod)
                          throws IOException

Throws:

IOException

getImportStatus

public ImportStatus getImportStatus(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI,
 boolean canonicalComparison)

Description copied from interface: OntologyManager

Returns the status of an ontology import. It is possible to indicate whether comparisons should be based on canonical names (i.e. stripping terminating #).The only relevant information is ImportStatus.getValue()

Specified by:

getImportStatus in interface OntologyManager

Returns:

getDeclaredImports

public Collection<org.eclipse.rdf4j.model.IRI> getDeclaredImports(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 ImportModality mod,
 boolean excludeStagedRemovals)
                                                           throws org.eclipse.rdf4j.common.exception.RDF4JException

retrieves the list of imports for the given ImportModality
note that these are imports declared (it is not assured that they have been imported successfully)

for example, getImportSet(ImportModality.USER) retrieves the set of all ontology imports set by the user

Parameters:

conn -

mod -

excludeStagedRemovals -

Returns:

Throws:

org.eclipse.rdf4j.common.exception.RDF4JException

declareApplicationOntology

public void declareApplicationOntology(org.eclipse.rdf4j.model.IRI ont,
 boolean declareImport,
 boolean ng,
 boolean ns)

Description copied from interface: OntologyManager

It can be used by ST extensions to declare use of application ontologies for supporting their functionalities. The boolean parameters can be used to declare different facets of an application ontology. If no parameter is set to , this declaration has no effect.

Specified by:

declareApplicationOntology in interface OntologyManager

declareImport - if true, declares an import with modality ImportModality.APPLICATION.

ng - if true, this prevents triples in the namedgraph of this ontology to be shown (when ST is in user mode)

ns - if true, this prevents triples having a predicate with namespace matching the name of ontology ont to be shown (again, when ST is in user mode)

declareSupportOntology

public void declareSupportOntology(org.eclipse.rdf4j.model.IRI ont,
 boolean declareImport,
 boolean ng,
 boolean ns)

Description copied from interface: OntologyManager

It can be used to declare use of an ontology, the presence of which is required by the system to work properly. As an example, core modeling vocabularies are usually declared as such. The boolean parameters can be used to declare different facets of a support ontology. If no parameter is set to , this declaration has no effect.

Specified by:

declareSupportOntology in interface OntologyManager

declareImport - if true, declares an import with modality ImportModality.SUPPORT.

ng - if true, this prevents triples in the namedgraph of this ontology to be shown (when ST is in user mode)

ns - if true, this prevents triples having a predicate with namespace matching the name of ontology ont to be shown (again, when ST is in user mode)

downloadImportedOntologyFromWeb

public void downloadImportedOntologyFromWeb(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI,
 String altURL,
 org.eclipse.rdf4j.rio.RDFFormat rdfFormat,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)
                                     throws ImportManagementException,
org.eclipse.rdf4j.common.exception.RDF4JException,
IOException

Description copied from interface: OntologyManager

Downloads an ontology that is a failed import from the web

Specified by:

downloadImportedOntologyFromWeb in interface OntologyManager

Throws:

ImportManagementException

org.eclipse.rdf4j.common.exception.RDF4JException

MalformedURLException

IOException

downloadImportedOntologyFromWebToMirror

public void downloadImportedOntologyFromWebToMirror(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI,
 String altURL,
 String toLocalFile,
 org.eclipse.rdf4j.rio.RDFFormat rdfFormat,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)
                                             throws ImportManagementException,
org.eclipse.rdf4j.common.exception.RDF4JException,
MalformedURLException,
IOException

Description copied from interface: OntologyManager

Downloads an ontology that is a failed import from the web to the ontology mirror

Specified by:

downloadImportedOntologyFromWebToMirror in interface OntologyManager

Throws:

ImportManagementException

org.eclipse.rdf4j.common.exception.RDF4JException

MalformedURLException

IOException

getImportedOntologyFromLocalFile

public void getImportedOntologyFromLocalFile(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI,
 String fromLocalFilePath,
 String toLocalFile,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)
                                      throws ImportManagementException,
org.eclipse.rdf4j.common.exception.RDF4JException,
IOException

Description copied from interface: OntologyManager

Retrieves an ontology that is a failed import from a local file and copies it to the ontology mirror

Specified by:

getImportedOntologyFromLocalFile in interface OntologyManager

Throws:

ImportManagementException

org.eclipse.rdf4j.common.exception.RDF4JException

MalformedURLException

IOException

getImportedOntologyFromMirror

public void getImportedOntologyFromMirror(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)
                                   throws ImportManagementException,
org.eclipse.rdf4j.common.exception.RDF4JException,
IOException

Description copied from interface: OntologyManager

Retrieves an ontology that is a failed import from the ontology mirror

Specified by:

getImportedOntologyFromMirror in interface OntologyManager

Throws:

ImportManagementException

org.eclipse.rdf4j.common.exception.RDF4JException

MalformedURLException

IOException

getImportedOntologyFromLocalProject

public void getImportedOntologyFromLocalProject(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI,
 Project sourceProject,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)
                                         throws ImportManagementException,
org.eclipse.rdf4j.common.exception.RDF4JException,
IOException

Description copied from interface: OntologyManager

Retrieves an ontology that is a failed import from a local project

Specified by:

getImportedOntologyFromLocalProject in interface OntologyManager

Throws:

org.eclipse.rdf4j.common.exception.RDF4JException

MalformedURLException

ImportManagementException

IOException

updateImportedOntologyFromWeb

public void updateImportedOntologyFromWeb(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI,
 String altURL,
 org.eclipse.rdf4j.rio.RDFFormat rdfFormat,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)
                                   throws MalformedURLException,
ImportManagementException,
org.eclipse.rdf4j.common.exception.RDF4JException,
IOException

Description copied from interface: OntologyManager

Updates an ontology import from the web

Specified by:

updateImportedOntologyFromWeb in interface OntologyManager

Throws:

MalformedURLException

ImportManagementException

org.eclipse.rdf4j.common.exception.RDF4JException

IOException

updateImportedOntologyFromWebToMirror

public void updateImportedOntologyFromWebToMirror(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI,
 String altURL,
 String toLocalFile,
 org.eclipse.rdf4j.rio.RDFFormat rdfFormat,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)
                                           throws ImportManagementException,
org.eclipse.rdf4j.common.exception.RDF4JException,
MalformedURLException,
IOException

Description copied from interface: OntologyManager

Updates an ontology import from the web and stores it to the ontology mirror

Specified by:

updateImportedOntologyFromWebToMirror in interface OntologyManager

Throws:

ImportManagementException

org.eclipse.rdf4j.common.exception.RDF4JException

MalformedURLException

IOException

updateImportedOntologyFromLocalFile

public void updateImportedOntologyFromLocalFile(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI,
 @Nullable
 String fromLocalFilePath,
 String toLocalFile,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)
                                         throws MalformedURLException,
ImportManagementException,
org.eclipse.rdf4j.common.exception.RDF4JException,
IOException

Description copied from interface: OntologyManager

Updates an ontology import from a local file and copies it to the ontology mirror

Specified by:

updateImportedOntologyFromLocalFile in interface OntologyManager

Throws:

MalformedURLException

ImportManagementException

org.eclipse.rdf4j.common.exception.RDF4JException

IOException

updateImportedOntologyFromLocalProject

public void updateImportedOntologyFromLocalProject(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI,
 String projectName,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)
                                            throws ImportManagementException,
org.eclipse.rdf4j.common.exception.RDF4JException,
IOException

Description copied from interface: OntologyManager

Updates an ontology import from a local project

Specified by:

updateImportedOntologyFromLocalProject in interface OntologyManager

Throws:

ImportManagementException

org.eclipse.rdf4j.common.exception.RDF4JException

IOException

updateImportedOntologyFromMirror

public void updateImportedOntologyFromMirror(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)
                                      throws MalformedURLException,
ImportManagementException,
org.eclipse.rdf4j.common.exception.RDF4JException,
IOException

Description copied from interface: OntologyManager

Updates an ontology import from the ontology mirror

Specified by:

updateImportedOntologyFromMirror in interface OntologyManager

Throws:

MalformedURLException

ImportManagementException

org.eclipse.rdf4j.common.exception.RDF4JException

IOException

isApplicationOntNamespace

public boolean isApplicationOntNamespace(String ns)

Description copied from interface: OntologyManager

Checks whether ns is an application ontology

Specified by:

isApplicationOntNamespace in interface OntologyManager

Returns:

isSupportOntNamespace

public boolean isSupportOntNamespace(String ns)

Description copied from interface: OntologyManager

Checks whether ns is a support ontology

Specified by:

isSupportOntNamespace in interface OntologyManager

Returns:

mirrorOntology

public void mirrorOntology(String baseURI,
 String toLocalFile)
                    throws ImportManagementException,
OntologyManagerException

Description copied from interface: OntologyManager

Copies an ontology to the ontology mirror.

Specified by:

mirrorOntology in interface OntologyManager

Throws:

ImportManagementException

OntologyManagerException

clearData

public void clearData()
               throws org.eclipse.rdf4j.common.exception.RDF4JException

Description copied from interface: OntologyManager

Clear the managed ontology

Specified by:

clearData in interface OntologyManager

Throws:

org.eclipse.rdf4j.common.exception.RDF4JException

removeNSPrefixMapping

public void removeNSPrefixMapping(String namespace,
 boolean checkOnlyExplicit)
                           throws NSPrefixMappingUpdateException

Description copied from interface: OntologyManager

Removes all prefix declarations for the supplied namespace

Specified by:

removeNSPrefixMapping in interface OntologyManager

Throws:

NSPrefixMappingUpdateException

setBaseURI

public void setBaseURI(String baseURI)

Description copied from interface: OntologyManager

Sets the base URI of the managed ontology

Specified by:

setBaseURI in interface OntologyManager

setNSPrefixMapping

public void setNSPrefixMapping(String prefix,
 String namespace)
                        throws NSPrefixMappingUpdateException

Description copied from interface: OntologyManager

Defines a namespace prefix. This method shouldn't be invoked explicitly by client code.

Specified by:

setNSPrefixMapping in interface OntologyManager

Throws:

NSPrefixMappingUpdateException

loadOntologyData

public void loadOntologyData(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 File inputFile,
 String baseURI,
 org.eclipse.rdf4j.rio.RDFFormat format,
 org.eclipse.rdf4j.model.Resource graph,
 boolean flattenGraphs,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)
                      throws FileNotFoundException,
IOException,
org.eclipse.rdf4j.common.exception.RDF4JException

Description copied from interface: OntologyManager

Adds RDF data directly to the ontology being edited (i.e. it is not a read-only import of an external ontology that the working ontology depends on, but a mass add of RDF triples to the main graph of the working ontology)

Specified by:

loadOntologyData in interface OntologyManager

Parameters:

conn - a connection to the managed ontology

inputFile - the RDF file from which RDF data is being loaded

baseURI - the baseURI to be used when importing relative names from loaded RDF data

flattenGraphs - if true, all statements wil be written into graph (IllegalArgumentException is thrown is the latter is null)

Throws:

FileNotFoundException

IOException

org.eclipse.rdf4j.common.exception.RDF4JException

getRDFHandlerForLoadData

public LoadDataRDFHandler getRDFHandlerForLoadData(org.eclipse.rdf4j.repository.RepositoryConnection conn,
 String baseURI,
 @Nullable
 org.eclipse.rdf4j.model.Resource graph,
 boolean flattenGraphs,
 TransitiveImportMethodAllowance transitiveImportAllowance,
 Set<org.eclipse.rdf4j.model.IRI> failedImports)

Description copied from interface: OntologyManager

Returns an RDFHandler that adds the data to the ontology being edited (i.e. it is not a read-only import of an external ontology that the working ontology depends on, but a mass add of RDF triples to the main graph of the working ontology)

Specified by:

getRDFHandlerForLoadData in interface OntologyManager

Parameters:

conn - a connection to the managed ontology

baseURI - the baseURI to be used when importing relative names from loaded RDF data

graph - optionally, the graph where statements without an explicit context will be written into

flattenGraphs - if true, all statements wil be written into graph (IllegalArgumentException is thrown is the latter is null)

initializeMappingsPersistence

public void initializeMappingsPersistence(NSPrefixMappings nsPrefixMappings)

Description copied from interface: OntologyManager

Initializes mapping persistence

Specified by:

initializeMappingsPersistence in interface OntologyManager

getMappingsPersistence

public NSPrefixMappings getMappingsPersistence()

Description copied from interface: OntologyManager

retrieves mapping persistence

Specified by:

getMappingsPersistence in interface OntologyManager

Returns:

nsPrefixMappingsPersistence

getRepository

public org.eclipse.rdf4j.repository.Repository getRepository()

Description copied from interface: OntologyManager

Returns the underlying Repository

Specified by:

getRepository in interface OntologyManager

Returns:

startOntModel

public void startOntModel(String baseURI,
 File repoDir,
 org.eclipse.rdf4j.repository.config.RepositoryConfig supportRepoConfig)
                   throws OntologyManagerException

Description copied from interface: OntologyManager

Starts the ontology manager

Specified by:

startOntModel in interface OntologyManager

Throws:

OntologyManagerException